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Pull requests: nf-core/modules

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Pull requests list

chore(deps): update pre-commit hook renovatebot/pre-commit-hooks to v37.356.0
#5592 opened May 11, 2024 by renovate bot Loading…
2 tasks
Bump OpenMS version
#5585 opened May 10, 2024 by jonasscheid Loading…
17 tasks
1
Added fastq_bwa_mem_samblaster
#5582 opened May 9, 2024 by GallVp Loading…
10 of 17 tasks
1
chore(deps): update pre-commit hook astral-sh/ruff-pre-commit to v0.4.4
#5581 opened May 9, 2024 by renovate bot Loading…
2 tasks
chore(deps): update ghcr.io/devcontainers/features/docker-in-docker docker tag to v2.10
#5580 opened May 9, 2024 by renovate bot Loading…
2 tasks
chore(deps): pin dependencies
#5579 opened May 9, 2024 by renovate bot Loading…
2 tasks
1
Add Vireo to modules
#5576 opened May 8, 2024 by wxicu Loading…
13 of 17 tasks
1
chore(deps): update condaforge/mambaforge docker tag to v24.3.0
#5561 opened May 3, 2024 by renovate bot Loading…
2 tasks
Unicycler nftest
#5544 opened Apr 30, 2024 by FloWuenne Loading…
14
Add skani round 2
#5539 opened Apr 29, 2024 by CarsonJM Loading…
17 tasks
5
Bump star version
#5529 opened Apr 26, 2024 by matthdsm Loading…
17 tasks
15
Add SubWorkflow: mmseqs_contig_taxonomy
Ready for Review
#5524 opened Apr 25, 2024 by Darcy220606 Loading…
10 of 17 tasks
6
feat(subworkflows): rename utils_nfvalidation_plugin to utils_validate_params
#5513 opened Apr 22, 2024 by maxulysse Loading…
17 tasks
5
Add support for Kallisto h5 format to tximeta-tximport
#5505 opened Apr 19, 2024 by nictru Loading…
1
add dedicated output channel for trimmomatic stderr log (needed for multiqc)
#5501 opened Apr 18, 2024 by jpalmer37 Loading…
7
chore(deps): update condaforge/mambaforge:24.1.2-0 docker digest to 5e370da
#5483 opened Apr 15, 2024 by renovate bot Loading…
2 tasks
1
Add util for extracting ribosomal transcripts
new module Adding a new module
#5479 opened Apr 15, 2024 by rannick Loading…
14 tasks done
@rannick
3
Add metamaps/classify
#5466 opened Apr 11, 2024 by sofstam • Draft
1 of 17 tasks
Make use of prefix and support gzipped input
#5424 opened Apr 3, 2024 by gariem Loading…
6
add module: Add xengsort/classify
new module Adding a new module
#5413 opened Mar 30, 2024 by diegomscoelho • Draft
1 of 17 tasks
@diegomscoelho
ci(renovate): Allow channels in environment.ymls
#5400 opened Mar 26, 2024 by edmundmiller Loading…
@edmundmiller
1
idemux test_data.config
#5391 opened Mar 26, 2024 by jaanckae Loading…
17 tasks
7
Added delly/filter, changed delly/call - this time with up-to-date fork
#5384 opened Mar 25, 2024 by alexnater Loading…
11 of 13 tasks
1
26
draft release for LJA assembler
draft help wanted Extra attention is needed new module Adding a new module
#5382 opened Mar 24, 2024 by MrTomRod Loading…
10 of 16 tasks
1
5
ArchR module
draft WIP Work in progress
#5359 opened Mar 21, 2024 by JuliaPhilipp Loading…
14 tasks
1
ProTip! Exclude everything labeled bug with -label:bug.