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Make use of prefix and support gzipped input #5424

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@gariem gariem commented Apr 3, 2024

  • Unzip the input file if it has .gz extension
  • Use the unzipped file for prediction
  • Provide output according to the prefix of the input tuple

@gariem gariem requested a review from CarsonJM as a code owner April 3, 2024 11:38
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@SPPearce
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You should delete the unzipped file, just conditionally on whether you needed to unzip. Else it'll hang around and take up space

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Could you add a zipped fasta file to the tests?

@SPPearce SPPearce dismissed their stale review April 29, 2024 18:44

Changes addressed

- Unzip input file if it has .gz extension
- Use the unzipped file for prediction
- Provide output according to the prefix of the input tuple
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