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add module: Add xengsort/classify #5413

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@diegomscoelho diegomscoelho commented Mar 30, 2024

Adds the xengsort tool, a tool for fast lightweight accurate xenograft sorting.
This is a part 2 of two steps for xengsort, classifier.

First part is in review: #5370

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@diegomscoelho diegomscoelho changed the title feat: First PR dump add module: Add xengsort/index Apr 1, 2024
@diegomscoelho diegomscoelho self-assigned this Apr 1, 2024
@diegomscoelho diegomscoelho added the new module Adding a new module label Apr 1, 2024
@diegomscoelho diegomscoelho changed the title add module: Add xengsort/index add module: Add xengsort/classify Apr 1, 2024
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