Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
PR checklist
Was supposed to close #4375
versions.yml
file.label
nf-core modules test <MODULE> --profile docker
nf-core modules test <MODULE> --profile singularity
nf-core modules test <MODULE> --profile conda
This is a draft to add a module for ArchR.
The tools is quite extensive and will likely require submodules. I started on "createarrowfiles" and "adddoubletscores" during the hackathon.
"createarrowfiles" is in the testing stage but still has issues. Most significantly:
The example data (output from testing cellrangeratac) is not sufficient for testing archR (because of biology), I recommend proceeding with the test data that comes with the archR package
The most helpful part of this draft is the Dockerfile, since ArchR is not available on bioconda or bioconductor. (I ran the tests with a local docker image, not quay.io image or similar)
"adddoublescores" is mostly an outline of a submodule at this point