Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
-
Updated
May 9, 2024 - TypeScript
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Infectious Disease Sequencing Platform
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Mycobacterial pipeline
NGLess: NGS with less work
SPAdes Genome Assembler
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
Rust crates for working with Workflow Description Language (WDL) documents.
A Similarity-Guided Alignment Algorithm
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials
Java utilities for Bioinformatics
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization
Collect outputs from BCCDC-PHL/routine-sequence-qc pipeline for usage by BCCDC-PHL/routine-sequence-qc-site
Automated upload of sequence data to IRIDA platform
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
A tool to circularize genome assemblies
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
Add a description, image, and links to the next-generation-sequencing topic page so that developers can more easily learn about it.
To associate your repository with the next-generation-sequencing topic, visit your repo's landing page and select "manage topics."