Popular repositories

1. Roary Roary Public

   Rapid large-scale prokaryote pan genome analysis

   Perl 291 190

2. Artemis Artemis Public

   Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

   Java 225 73

3. snp-sites snp-sites Public

   Finds SNP sites from a multi-FASTA alignment file

   C 225 50

4. circlator circlator Public

   A tool to circularize genome assemblies

   Python 217 56

5. ariba ariba Public

   Antimicrobial Resistance Identification By Assembly

   Python 152 52

6. assembly-stats assembly-stats Public

   Get assembly statistics from FASTA and FASTQ files

   C++ 105 22