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Nextstrain

Real-time tracking of pathogen evolution

134 followers
https://nextstrain.org
@nextstrain

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ncov ncov Public

Nextstrain build for novel coronavirus SARS-CoV-2

Python 1.4k 404
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 262 128
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 288 160

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Showing 10 of 84 repositories

auspice.us Public

JavaScript 13 8 6 2 Updated Apr 29, 2024
nextstrain.org Public
The Nextstrain website

JavaScript 85 AGPL-3.0 49 54 (1 issue needs help) 8 Updated Apr 29, 2024
auspice Public
Web app for visualizing pathogen evolution

JavaScript 288 AGPL-3.0 160 207 (4 issues need help) 46 Updated Apr 28, 2024
avian-flu Public
Nextstrain build for avian influenza viruses

Python 10 5 1 1 Updated Apr 27, 2024
augur Public
Pipeline components for real-time phylodynamic analysis

Python 262 AGPL-3.0 128 198 (1 issue needs help) 57 Updated Apr 27, 2024
mpox Public
Nextstrain build for mpox virus

Python 39 MIT 16 20 5 Updated Apr 26, 2024
dengue Public
Nextstrain build for dengue virus

Python 8 10 6 5 Updated Apr 26, 2024
docs.nextstrain.org Public
Umbrella documentation project for Nextstrain

Python 17 13 29 6 Updated Apr 26, 2024
nextclade Public
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

TypeScript 199 MIT 57 129 (47 issues need help) 29 Updated Apr 26, 2024
measles Public
Nextstrain build for measles virus

Python 0 5 2 0 Updated Apr 25, 2024

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Python JavaScript Shell TypeScript C

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