RADseq Data Exploration, Manipulation and Visualization using R

A high performance tool to identify orthologs and paralogs across genomes.

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

🍣 🦐 A lightweight nucleotide bacterial ortholog clustering tool

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

Identification of gene paralogs in genomes, and calculation of dS and dN/dS values for paralogous gene pairs

Check trees for compatibility with defined groupings in unrooted trees - "The incontestable clan test"

miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs

The analytical pipeline of the AL4 strain genome

Wrapper script that calls formatdb on nr database and then runs blastall against formatted db and parses the output.