Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Desktop utility that helps preventing repetitive strain injuries by keeping track of usage patterns and periodically informing the user to take breaks.

Metabolic Engineering Workbench

A python library for correlating EBSD and HRDIC data

Implementation of geometric phase analysis (GPA) in C++

⚡🧠A finite element Python implementation

An RNA virus strain-level identification tool for short reads.

A Schrödinger-Poisson solver for 2D materials with 1D interfaces (wires)

Generates an Abaqus simulation batch describing a cracked half-plane, and outputs the J-integral

Connected Hangboard for climbers

Computes the electronic band structure of bulk ZB semiconductor with k.p models WITH STRAIN

GAN/convolutional and Transformer models to predict missing mechanical information given limited known data in part of the domain, and further characterize the composite geometries from the recovered mechanical fields for 2D and 3D complex microstructures

Module of the SailTrack system for measuring the forces acting on the boat maneuvers.

Bash scripts to plot coulomb results on gmt

A finite element code to solve for the dynamic fragmentation of concrete at different strain rates. A bi-linear cohesive zone model is used for the simulation

Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.

Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

Planetary crustal and mantle properties, and lithospheric displacements, stress and strain, calculations in spherical harmonics.

FEM 1D example with Python

PsyBot is a harm reduction and drug education orientated discord bot