Discussions

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  How to use -- trust config module correctly?

  zhanchunhui asked Apr 25, 2024 in Q&A · Closed · Answered

  

  

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  Error, system call for...

  oom Out of memory log Errors explained in the log file

  Sunshaoe asked Apr 20, 2024 in Q&A · Closed · Unanswered

  

  

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  Mitochondrial assembly

  HNTHUS asked Apr 18, 2024 in Q&A · Closed · Unanswered

  

  

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  Merge contigs (chromosome and plasmid) from two assemblers

  cjp931401 asked Apr 4, 2024 in Q&A · Unanswered

  

  

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  After upgrading to python3.12 : Error importing LooseVersion from distutils. Now needs to come directly from looseversion.

  haslamdb started Mar 26, 2024 in General · Closed

  

  

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  Some contig sequences are not supported well by read mapping in a very low-depth metagenome assembly.

  ilnamkang asked Mar 12, 2024 in Q&A · Unanswered

  

  

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  Questions on Co-assembly with metaSPAdes for Metagenomic Analysis

  Pompamm asked Mar 1, 2024 in Q&A · Closed · Unanswered

  

  

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  == Error == system call OS return value: -9

  andrewisaiah asked Feb 21, 2024 in Q&A · Closed · Unanswered

  

  

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  Error correction and assembling warnings

  liuyca1 asked Feb 18, 2024 in Q&A · Closed · Unanswered

  

  

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  running SPAdes on paired end reads of different length didn't generate scaffolds.fasta

  AlumaEtzion asked Jan 4, 2024 in Q&A · Closed · Unanswered

  

  

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  Considering hybrid assembly with metaspades or just using metaflye. How does metaspades handle overlapping long reads that do not overlap with small reads?

  jolespin asked Dec 23, 2023 in Q&A · Answered

  

  

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  Performance statistics, where?

  rbtoscan asked Dec 15, 2023 in Q&A · Unanswered

  

  

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  Error OS return value -11

  invalid

  CorentinEscobar asked Dec 11, 2023 in Q&A · Closed · Unanswered

  

  

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  Error Correction

  sydelstan asked Dec 4, 2023 in Q&A · Answered

  

  

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  When should we use Metaviral-spades instead of Meta-spades, given that it is designed for complete genomes?

  actledge asked Nov 7, 2023 in Q&A · Unanswered

  

  

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  == Error == file not found: ../reference/GCF_000005845.2_ASM584v2_genomic.fna$ (single reads, library number: 1, library type: trusted-contigs)

  wagaw12 started Nov 1, 2023 in General · Closed

  

  

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  Kmers and the Assembly Graph: "GFA used k-mer length (k=55) must match the command line settings (k=21)"

  nickp60 asked Sep 27, 2023 in Q&A · Closed · Answered

  

  

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  == Error == system call for:finished abnormally, OS return value: -9

  Steavnzhou asked Sep 27, 2023 in Q&A · Unanswered

  

  

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  Error after --continue

  Nwilliams96 asked Sep 14, 2023 in Q&A · Closed · Unanswered

  

  

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  Binspreader mainly increases contamination

  SilasK asked Aug 30, 2023 in Q&A · Unanswered

  

  

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  Co-assembly with rnaspades

  lilyyycao asked Jul 14, 2023 in Q&A · Answered

  

  

  

  

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  Can I use single and paired end fastq data from same species to generate single transcriptomic assembly in rnaSPADES?

  ReemaSingh asked Aug 28, 2023 in Q&A · Answered

  

  

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  Searing for viral but bacteria show up

  javad30 asked Aug 2, 2023 in Q&A · Closed · Unanswered

  

  

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  Error while running SPAdes in WSL2

  invalid oom Out of memory log Errors explained in the log file

  joseailtoncruz asked Jul 25, 2023 in Q&A · Closed · Unanswered

  

  

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  Estimated running time

  snayfach asked Jul 20, 2023 in Q&A · Closed · Unanswered

  

  

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