DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Official code repository for GATK versions 4 and up

Data intensive science for everyone.

Analysis of single cell RNA-seq data course

SPAdes Genome Assembler

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Simple & Efficient data access for Scala and Scala.js

A repository for setting up a RNAseq workflow

A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom events.

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

Analysis Pipeline for Single Cell ATAC-seq

Rapid large-scale prokaryote pan genome analysis

Structural variant toolkit for VCFs

A Java API for high-throughput sequencing data (HTS) formats.

A minimal and human-readable language and environment for the live coding of algorithmic electronic music.

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`