Chan Zuckerberg ID ·

Infectious Disease Sequencing Platform

CZ ID is a hypothesis-free global software platform that helps scientists identify pathogens in metagenomic sequencing data.

Discover - Identify the pathogen landscape
Detect - Monitor and review potential outbreaks
Decipher - Find potential infecting organisms in large datasets

A collaborative open project of Chan Zuckerberg Initiative and Chan Zuckerberg Biohub.

Check out our repositories:

czid-web - Frontend portal (here)
czid-workflows - Bioinformatics workflows
czid-cli - Command line upload interface
czid-bench - Pipeline benchmarking tools

Check out our wiki for getting started with development in this repository and in CZ ID in general.

Name		Name	Last commit message	Last commit date
Latest commit History 5,855 Commits
.github/workflows		.github/workflows
_templates		_templates
app		app
bin		bin
config		config
db		db
docker		docker
e2e		e2e
graphql_schema		graphql_schema
jest		jest
lib		lib
log		log
scripts		scripts
spec		spec
test		test
tmp		tmp
vendor		vendor
wiki-resources		wiki-resources
.babelrc		.babelrc
.byebugrc		.byebugrc
.dockerignore		.dockerignore
.eslintrc		.eslintrc
.eslintrc-a11y.json		.eslintrc-a11y.json
.flake8		.flake8
.gitignore		.gitignore
.irbrc		.irbrc
.node-version		.node-version
.prettierignore		.prettierignore
.prettierrc.json		.prettierrc.json
.rspec		.rspec
.rubocop.yml		.rubocop.yml
.ruby-version		.ruby-version
.sauceignore		.sauceignore
.simplecov		.simplecov
CODEOWNERS		CODEOWNERS
DEV_GUIDELINES.md		DEV_GUIDELINES.md
DEV_README.md		DEV_README.md
Dockerfile		Dockerfile
Gemfile		Gemfile
Gemfile.lock		Gemfile.lock
Guardfile		Guardfile
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
Rakefile		Rakefile
SECURITY.md		SECURITY.md
babel.config.js		babel.config.js
balances.json		balances.json
config.ru		config.ru
czecs-resque.json		czecs-resque.json
czecs-shoryuken.json		czecs-shoryuken.json
czecs-task-migrate.json		czecs-task-migrate.json
czecs.json		czecs.json
docker-compose.yml		docker-compose.yml
enzyme_config.js		enzyme_config.js
jest.config.js		jest.config.js
package-lock.json		package-lock.json
package.json		package.json
pull_request_template.md		pull_request_template.md
pyproject.toml		pyproject.toml
relay.config.js		relay.config.js
requirements-dev.txt		requirements-dev.txt
requirements.txt		requirements.txt
webpack.config.common.js		webpack.config.common.js
webpack.config.dev.js		webpack.config.dev.js
webpack.config.prod.js		webpack.config.prod.js

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chanzuckerberg/czid-web

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Chan Zuckerberg ID ·

Infectious Disease Sequencing Platform

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