Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Influenza forecasts visualizer

An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.

🛡Crowd-sourced COVID-19 reporting and assessment system.

A R statistical software package for estimating attributable influenza morbidity & mortality

Import script needed to build FluPRINT database from source 💻

🌏Record the last days of this earth. Don't they know this's the end of the world. It ended when you say good-bye.

The Moving Epidemic Method R Package

Gene and Primer Sequence Analysis for SARS-CoV-2, EGFR(Non Small Lung Cancer Cell), Influenza DNAs ### How can I check my Oligo primers to ensure there are no significant primer design issues? - The difference between melting temperatures (Tm) of the primers should be less than 5°C. - The GC content should be between 35-80% or equivalent to the …

The Flexible Epidemic Modeling Pipeline

Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

We apply combinatorial mutagenesis and next-generation sequencing to characterize the local fitness landscape in an antigenic region of NA in six different human H3N2 strains that were isolated around 10 years apart. This pipeline is used to analyze data and plotting.

RECDS identifies cluster-transition determining sites underlying the antigenic evolution of seasonal influenza viruses

The Moving Epidemic Method Shiny Web Application

Data on US ILI, influenza pos lab tests, and total influenza cases from 1998-2019

stochastic modeling | HMM

Flu clade and mutation frequencies

Dataset of Influenza Incidence and Wikipedia Pagecounts (and Pageviews).

A Python script that sends Italian flu updates to Mastodon

Shiny app for FSN model comparison