Data intensive science for everyone.
-
Updated
May 9, 2024 - Python
Data intensive science for everyone.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Official code repository for GATK versions 4 and up
Analysis of single cell RNA-seq data course
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Rapid large-scale prokaryote pan genome analysis
A repository for setting up a RNAseq workflow
Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
SPAdes Genome Assembler
Analysis Pipeline for Single Cell ATAC-seq
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
SortMeRNA: next-generation sequence filtering and alignment tool
UGENE is free open-source cross-platform bioinformatics software
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
A tool to circularize genome assemblies
Add a description, image, and links to the sequencing topic page so that developers can more easily learn about it.
To associate your repository with the sequencing topic, visit your repo's landing page and select "manage topics."