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67 Open 557 Closed
67 Open 557 Closed
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Issues list

Global configuration item not always being used bug Something isn't working
#736 opened Apr 12, 2024 by wlymanambry
Support transcript identifiers (in parentheses) in variants
#735 opened Apr 10, 2024 by marius-mather
CDS phase (frame offset for eg ribo slippage) not taken into account in amino acid translation bug Something isn't working data provider schema change
#732 opened Mar 13, 2024 by davmlaw
p type cannot be validated bug Something isn't working
#727 opened Feb 7, 2024 by markgene
1
Investigate and improve hgvs performance project proposal project proposal for interns and GSoC students stale Issue is stale and subject to automatic closing
#721 opened Feb 5, 2024 by reece
1
Modify parser to include common errors to provide better error messages than "syntax error"
#720 opened Jan 25, 2024 by davmlaw
2
c_to_p for dups that start in transcript but end in UTR bug Something isn't working
#715 opened Jan 4, 2024 by b0d0nne11
1
8
c_to_p at intron/exon boundary where splice region is preserved
#714 opened Dec 19, 2023 by b0d0nne11
1
2
Consider exposing a utility for converting between g. variants by leveraging pyliftover enhancement New feature or request keep alive exempt issue from staleness checks
#711 opened Nov 17, 2023 by mihaitodor
6
How to properly handle selenoproteins
#710 opened Nov 10, 2023 by holtgrewe
2
hgvs_c to hgvs_p projection throws IndexError for "NM_001253909.2:c.416_417insGTG" bug Something isn't working
#707 opened Oct 21, 2023 by holtgrewe
1
2
Validation - refactor to be able to retrieve all errors rather than throw exception on 1st enhancement New feature or request keep alive exempt issue from staleness checks
#706 opened Oct 9, 2023 by davmlaw
5
Normalizer.normalize() is performing sequence position validation which cannot be skipped keep alive exempt issue from staleness checks
#705 opened Oct 9, 2023 by mihaitodor
4
Normalizer constructor doesn't pass the validate param to the VariantMapper constructor keep alive exempt issue from staleness checks
#704 opened Oct 7, 2023 by mihaitodor
4
Exon boundary / intron validation - need for genome build specific validation? data provider schema change enhancement New feature or request keep alive exempt issue from staleness checks
#700 opened Sep 28, 2023 by davmlaw
4
Update / modernize packaging keep alive exempt issue from staleness checks
#691 opened Sep 14, 2023 by reece
4
mitochondria (m.) assembly mapping resurrected
#663 opened Jul 5, 2023 by davmlaw
6
Inconsistencies across intron/exon boundaries keep alive exempt issue from staleness checks
#655 opened May 23, 2023 by cassiemk
1
6
Support for circular genomic identifiers resurrected
#650 opened Apr 3, 2023 by mbiokyle29
3
Make data provider config explicit resurrected
#645 opened Nov 12, 2022 by reece
@reece
3
Use kitchensinksetup in all tests resurrected
#644 opened Nov 12, 2022 by reece
@reece
3
Support transcript variants with specification of underlying genomic reference resurrected
#642 opened Sep 30, 2022 by reece
3
How to apply a protein change to a given amino acid sequence to produce a mutant amino acid sequence resurrected
#641 opened Jun 24, 2022 by nh13
9
Dup should have an alt when available resurrected
#638 opened Jun 23, 2022 by nh13
4
Announcing cdot: a data provider to load lots of transcripts fast resurrected
#634 opened Feb 3, 2022 by davmlaw
18
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