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Pinned

  1. RNAseq-workflow RNAseq-workflow Public

    A repository for setting up a RNAseq workflow

    R 382 177

  2. MicrobeDS MicrobeDS Public

    A repository for large-scale microbiome datasets, formatted for phyloseq

    R 22 5

  3. HANSolo-manuscript HANSolo-manuscript Public

    Identification of patient-specific T cell neoantigens through HLA-agnostic genetic screens (Cattaneo et al, Nature Biotechnology, 2023)

    HTML 2 1

  4. tumor-microbiome tumor-microbiome Public

    A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)

    R 2

  5. koeken koeken Public

    A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.

    Python 26 7

  6. btools btools Public

    A set of R functions that help faciliate a lot of tedious processing

    R 17 6