Trinity Tidbits
Brian Haas edited this page Sep 26, 2015
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#Trinity Tidbits
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Trinity made the cover of the July 2011 NBT issue. The Broad Institute's blog has a story on how the Trinity project came together. Nir Friedman, one of the project PIs, has a blog entry describing the developmental process underlying the NBT cover design.
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Trinity was shown to be the leading de novo transcriptome assembly tool as part of the DREAM6 Alt-Splicing Challenge 2011. Results were posted here.
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Google Scholar shows how Trinity is being used by the community.
- Trinity Wiki Home
- Installing Trinity
- Running Trinity
- Trinity process and resource monitoring
- Output of Trinity Assembly
- Assembly Quality Assessment
- Downstream Analyses
- Miscellaneous additional functionality that may be of interest
- Contributing code
- Trinity Tidbits
- Frequently Asked Questions (FAQ)
- There are too many transcripts! What do I do?
- How to minimize RAM usage
- How do I use reads I downloaded from SRA
- How do I identify the specific reads that were incorporated into the transcript assemblies?
- How can I perform cross-species analysis?
- How do I combine PE and SE reads?
- How can I run this in parallel on a computing grid?
- Computing and Time requirements
- Errors during Trinity run
- Killing Trinity
- Contact us