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263 Open 1,068 Closed
263 Open 1,068 Closed
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Issues list

Trinity RNA-seq maintenance and support as of 2024
#1409 opened Apr 30, 2024 by brianjohnhaas
dexseq_wrapper.pl took very long time to run and did not use additional CPUs
#1408 opened Apr 30, 2024 by TomKLHui
2
Error running 'make' command
#1407 opened Apr 24, 2024 by lexikazen
3
Running problem
#1406 opened Apr 24, 2024 by Gratutu
1
I wish Trinity could pickup where it left off
#1405 opened Apr 22, 2024 by nmacknight
1
Running problem
#1404 opened Apr 22, 2024 by KJ3672
8
Question about the outcome of Trinity
#1403 opened Apr 13, 2024 by allanlinzhang
Trinity does not considers intron's length significance
#1402 opened Apr 12, 2024 by BernardoChomboAlvarez
Run with "-single x.fastq --run_as_paired"
#1401 opened Apr 6, 2024 by YouxinZhao
Genome Guided Assembly with Multiple Conditions and Replicates
#1400 opened Apr 3, 2024 by msrosenberg
1
abundance_estimates_to_matrix.pl output counts as nortmalization?
#1399 opened Mar 19, 2024 by fcsalgado
1
Error, at least one thread died
#1398 opened Mar 18, 2024 by jpac02
Jellyfish issue
#1396 opened Mar 13, 2024 by jhb5696
2
Trinity GG Intron value
#1395 opened Mar 12, 2024 by Tsebifera
2
Issue with phase 2: Read assembly
#1394 opened Mar 5, 2024 by adrianestrada1405
5
Assembly stalled at Inchworm.
#1393 opened Feb 29, 2024 by JenBMoss
6
jellyfish error
#1392 opened Feb 24, 2024 by ShenTTT
2
recursive_trinity.cmds error
#1391 opened Feb 22, 2024 by st303118
5
Alternative Splice Transcripts/ Repeat Element Inserts
#1389 opened Feb 8, 2024 by bshim181
1
stop without error
#1388 opened Feb 5, 2024 by shanzha9
1
error while running trinity
#1387 opened Feb 5, 2024 by nargisbashir
1
Salmon error and --samples_file specification
#1386 opened Feb 2, 2024 by francicco
9
Trinity de novo assembly of fusion transcripts
#1384 opened Jan 30, 2024 by bshim181
5
Issue with jellyfish under bioconda
#1383 opened Jan 30, 2024 by SaFilker
2
Error, no TPM value specified for transcript [TRINITY_DN0_c0_g1_i11] of gene [TRINITY_DN0_c0_g1] for sample 5_gene_count at /opt/software/Trinity/2.15.1-foss-2022a/trinityrnaseq-v2.15.1/util/abundance_estimates_to_matrix.pl line 323.
#1382 opened Jan 29, 2024 by daniellembecker
1
ProTip! no:milestone will show everything without a milestone.