Skip to content

Issues: bystrogenomics/bystro

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

116 Open 94 Closed
116 Open 94 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Rare Variant Analysis Paper Compendium rare variant analysis
#488 opened May 7, 2024 by akotlar
POE Deal with systematic bias in singular values under null model
#460 opened Apr 3, 2024 by cristinaetrv
Sprint 11 Task List .task list A checklist of smaller tasks
#456 opened Apr 1, 2024 by akotlar
17 of 43 tasks
Sprint 11
8
PyPI Bystro package
#446 opened Mar 21, 2024 by cristinaetrv
[annotation] Add LOFTEE and REVEL annotation
#444 opened Mar 20, 2024 by akotlar
@akotlar
[rare variant] Add support for STAAR rare variant analysis
#443 opened Mar 20, 2024 by akotlar
@akotlar
[prs] Benchmark Langevin Dynamics PRS-CS against PRS-CS and SBayes-RC prs Polygenic Risk Score methods
#424 opened Mar 8, 2024 by akotlar
@austinTalbot7241993
[annotation] Stitch Together VCF Files - Second Step
#423 opened Mar 8, 2024 by akotlar
[ancestry] Use assembly when choosing which model to use ancestry
#422 opened Mar 8, 2024 by akotlar Sprint 9
@akotlar
Sprint 9 Task List .task list A checklist of smaller tasks
#421 opened Mar 8, 2024 by akotlar
26 of 35 tasks
Sprint 9
3
Send assembly version with ancestry job requests ancestry
#419 opened Mar 7, 2024 by akotlar Sprint 8
@akotlar
Determine standard in/outbound ports that we need on servers
#412 opened Feb 20, 2024 by cristinaetrv
@akotlar @dlin30
Create local Ancestry cli tool ancestry
#404 opened Feb 14, 2024 by akotlar Sprint 7
@akotlar
Consistent bystro config naming scheme
#393 opened Feb 3, 2024 by wingolab
@akotlar @wingolab
4
Sprint 7 - Rare variant Task List .task list A checklist of smaller tasks
#391 opened Feb 2, 2024 by cristinaetrv
4 tasks
Sprint 7
Add p-value thresholding with GWAS catalog inputs prs Polygenic Risk Score methods
#371 opened Jan 12, 2024 by cristinaetrv
@cristinaetrv
Add functionality for GWAS catalog as input prs Polygenic Risk Score methods
#370 opened Jan 12, 2024 by cristinaetrv
@cristinaetrv
Add specific ancestry connection to genetic maps prs Polygenic Risk Score methods
#369 opened Jan 12, 2024 by cristinaetrv
@cristinaetrv
Finish v1 of LD clumping procedure using genetic maps prs Polygenic Risk Score methods
#368 opened Jan 12, 2024 by cristinaetrv
@cristinaetrv
Investigate opensearch regression, not treating spaces as && within fields search
#349 opened Nov 13, 2023 by akotlar Sprint 4
@akotlar
2
[annotation] Decide on whether to output "intergenic" refSeq.siteType, or keep it as missing annotation
#330 opened Oct 26, 2023 by akotlar
@akotlar
[chore] Update annotation config to use snake case
#328 opened Oct 24, 2023 by akotlar
@akotlar
IBD Genomics Consortium - Task List for v2 .task list A checklist of smaller tasks
#326 opened Oct 24, 2023 by akotlar
6 tasks
@akotlar
1
Unit tests for PRS worker prs Polygenic Risk Score methods
#319 opened Oct 23, 2023 by cristinaetrv Sprint 7
Integration test for PRS worker prs Polygenic Risk Score methods
#318 opened Oct 23, 2023 by cristinaetrv Sprint 7
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.