Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Send assembly version with ancestry job requests #419

Open
akotlar opened this issue Mar 7, 2024 · 0 comments
Open

Send assembly version with ancestry job requests #419

akotlar opened this issue Mar 7, 2024 · 0 comments
Assignees
Labels
Milestone

Comments

@akotlar
Copy link
Collaborator

akotlar commented Mar 7, 2024

Background:

A concise description of why we're pursuing this task.

Currently we assume all ancestry requests are for hg38. As we don't have a liftover step, preferring to natively process hg19 vcf's, we need to carry the assembly in the ancestry submission job request, so that the appropriate model can be loaded.

Completion Criteria:

What is the goal, and how do we know this task is accomplished?

In the ancestry submission, assembly is a property, having the value of the assembly property on the job document

Implementation Summary

Give enough technical detail for a teammate to understand the proposed solution.

AncestryJobData needs to now expect an assembly property (string valued). This property then needs to be threaded through to the ancestry inference procedure, which currently hardcodes an hg38 expectation

@akotlar akotlar self-assigned this Mar 7, 2024
@akotlar akotlar added this to the Sprint 8 milestone Mar 7, 2024
@akotlar akotlar mentioned this issue Mar 8, 2024
35 tasks
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant