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Sprint 4

Past due by 6 months 60% complete

End of November (11/30)
-Core competencies description
-Bi-plots for ancestry, change ancestry table
-Faster indexing (make python code faster)
-Set up public instance
-New annotation features and new annotation output (Change SNP to MNP where needed, TS/TV, VCFpos location)

For 12/5
-Finish CZI proposal

Final version for GV demo (includes above, demo is …

End of November (11/30)
-Core competencies description
-Bi-plots for ancestry, change ancestry table
-Faster indexing (make python code faster)
-Set up public instance
-New annotation features and new annotation output (Change SNP to MNP where needed, TS/TV, VCFpos location)

For 12/5
-Finish CZI proposal

Final version for GV demo (includes above, demo is 12/14)
-Open jupyter notebook, use python API to do same thing (fragpipe output using genetic annotation that you can download), regression in python proteomic analysis
-Use of webapp for subset of fragpipe output using genetic annotation that you can download (front-end)
-Proteomics CLI tool needs to go through webapp
-RR or genetic corr demo on sim data or slide