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Add specific ancestry connection to genetic maps #369

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Tracked by #372
cristinaetrv opened this issue Jan 12, 2024 · 0 comments
Open
Tracked by #372

Add specific ancestry connection to genetic maps #369

cristinaetrv opened this issue Jan 12, 2024 · 0 comments
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prs Polygenic Risk Score methods

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@cristinaetrv
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Background:

Genetic maps vary by ancestry, so in order to use the correct one for PRS, ancestry needs to be taken into account.

Completion Criteria:

Completed when PRS module takes in ancestry information and uses it for LD clumping

Implementation Summary

Acquire and lift over genetic maps for multiple ancestral groups (in 1KGP) to hg38, then integrate genetic maps that connect with ancestry per individual for LD clumping into PRS workflow
@cristinaetrv cristinaetrv added the prs Polygenic Risk Score methods label Jan 12, 2024
@cristinaetrv cristinaetrv added this to the Sprint 6 milestone Jan 12, 2024
@cristinaetrv cristinaetrv self-assigned this Jan 12, 2024
@cristinaetrv cristinaetrv removed this from the Sprint 6 milestone Feb 7, 2024
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