A research biochemical network explorer and genetic cytohistological encyclopedia.
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Updated
Apr 4, 2024 - Python
A research biochemical network explorer and genetic cytohistological encyclopedia.
rbioapi: User-Friendly R Interface to Biologic Web Services' API
A set of GO-CAMs built automatically from Reactome pathways.
Explore biomolecular pathways in Reactome from the command-line or a Python script
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…
Converts Reactome pathways to GPML format
Python implementation of a bipartite directed multigraph extracted from the Reactome biological pathway database.
Research into statistical distributions of genomes, proteomes and reactomes
Integration of pathway-related information from Reactome in BEL
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
Google Summer Of Code 2020.
Converting SBGN-encoded pathways to the SIF file format
Converting SBGN encoded pathways to the SIF file format
This fork is intended solely for generating a GSEA jar file that is compatible with Reactome.
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
Service to generate images of top level pathway view (the fireworks).
An example on how to use reactome Rest API
Add a description, image, and links to the reactome topic page so that developers can more easily learn about it.
To associate your repository with the reactome topic, visit your repo's landing page and select "manage topics."