📊 A universal enrichment tool for interpreting omics data
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Updated
Apr 11, 2024 - R
📊 A universal enrichment tool for interpreting omics data
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
An interactive radial tree for functional hierarchies and omics data visualization
KEGG Module Evaluation Tool
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
Utilizing graphical neural networks and embeddings on a medical database KEGG to perform link predictions and drug similarity systems.
A comprehensive gene set function enrichment tool for multiple species.
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
Library for KEGG pathway enrichment analysis
Build Annotation package by using information from KEGG, NCBI, Ensembl
A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
Python wrapper for ipath3
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