🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
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Updated
Mar 15, 2024 - C++
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
A collection of Galaxy-related training material
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Bioconductor cheat sheet
Fast, efficient RNA-Seq metrics for quality control and process optimization
Transcript quantification import for modular pipelines
RNA sequencing analysis software
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
Compare different differential abundance and expression methods
Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Differential gene expression analysis and pathway analysis of RNAseq data
Software for exploration of gene expression data from single-cell RNA sequencing.
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