Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
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Updated
Feb 26, 2024 - R
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
Gene set variation analysis
Lightweight Iterative Gene set Enrichment in R
CAusal Reasoning for Network Identification with integer VALue programming in R
Cancer-dedicated gene set interpretation
From RNA-seq raw reads to enriched pathways by DEGs
Explore biomolecular pathways in Reactome from the command-line or a Python script
A Python package for benchmarking pathway database with functional enrichment and classification methods
Single sample pathway analysis tools for omics data
A Python package for metabolite enrichment analysis.
R package for de novo pathway enrichment using KeyPathwayMiner
FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.
Analysis and visualization of RNA-Seq results
Cellular signatures characterisation after carcinogenic chemical exposure in mammalian tissue.
GWAS of Postmortem Brain Samples Sheds Light on the Development of Schizophrenia and Bipolar Disorder
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
WikiPathways Summit Planning
Just another wrapper for pathway analysis using MAGMA
Python and R programs used in the identification of repurposed drugs against viruses responsible for causing epidemics/pandemics
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