Synthetic biology (SynBio) is a multidisciplinary area of research that seeks to create new biological parts, devices, and systems, or to redesign systems that are already found in nature.
Genetic circuit design automation
A Go package for engineering organisms.
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
✏️ A versatile DNA sequence optimizer
BGC Detection and Classification Using Deep Learning
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
Computational synthetic biology: Predicting DNA edits for bioengineering
Open source biolab
The resources I always recommend to new synthetic biologists.
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
Web application enabling users and software to browse, upload, and share synthetic biology designs
Cello v2 is the continuation of the Cello genetic circuit design software.
⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Reinforcement Learning based bioretrosynthesis tool
🤖 Python biolab automation library: parsers, reports generators, picklists simulators, and more
👾 Generate identicons for DNA sequences with Python
💠 Find common blocks and differences between DNA sequences
🌸 Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
Interpretable genotype-phenotype landscape modeling