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francescopatane96/README.md

Hi 👋, I'm Francesco Patanè, MSc

Me and my interests:

I obtained my bachelor degree in Biotechnology (Pharmaceutical curricula) from University of Padova, Italy; from the same i'm going to obtain my Master degree in September 2023.

I am a passionate biotechnologist living in Italy and keen on Machine learning Drug/Vaccine discovery. My plethora of interests is vast and includes fields such as molecular biology, molecular modelling, synthetic biology and bioinformatics, cancer research etc--

During my research internship (Master degree) i developed the first stand-alone reverse vaccinology pipeline designed for the discovery of vaccines against eukaryotic microbes like malaria protozoa.

I love the idea of using bioinformatic methods (and of course also AI) and wet lab activities together in order to make science more economic and fast

Ongoing projects:

  • 👨‍🔬 eNERVE: eukaryotic New Enhanced Reverse Vaccinology Environment. Role: Principal curator;
  • 🔬 bNERVE: bacteria New Enhanced Reverse Vaccinology Environment. Role: curator;
  • 🦠 Codon Usage optimization for industrial applications (biocatalysisi and pharmaceuticals);
  • 📊 Protein xAI (explainable AI/ML in protein reseach);
  • 📚 Bionformatics tutorials: Vaccine discovery assisted by Artifical Intelligence (ML and DL);
  • 📚 Chemoinformatics tutorials: Drug discovery assisted by CADD (ML and DL).

Connect with me:

francescopatane96

francescopatane96

Languages and Tools:

android arduino azure bash c chartjs couchdb cplusplus css3 docker elasticsearch flask git grafana html5 ifttt java javascript jenkins linux mariadb matlab mongodb mysql pandas postgresql python rabbitMQ scikit_learn seaborn sqlite tensorflow travisci

francescopatane96

 francescopatane96

Pinned

  1. Computer_aided_drug_discovery_kit Computer_aided_drug_discovery_kit Public

    This pipeline provides a way to perform pharmaceutical compounds virtual screening using similarity-based analysis, ligand-based and structure-based techniques. The pipeline contains a collections …

    Jupyter Notebook 13 11

  2. eNERVE eNERVE Public

    eNERVE is a dynamic, high-throughput and standalone in silico reverse vaccinology pipeline for eukaryotic protein candidate vaccines (PVCs) discovery from entire proteomes (FASTA file).

    Jupyter Notebook 2 2

  3. protein-xAI protein-xAI Public

    protein xAI

    Jupyter Notebook