PDV: an integrative proteomics data viewer
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Apr 28, 2024 - Java
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proteogenomics
Here are 30 public repositories matching this topic...
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
workflow
pipeline
nextflow
proteomics
dia
mass-spectrometry
openms
proteogenomics
tmt
nf-core
mass-spec
lfq
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May 6, 2024 - Nextflow
Library for mass spectrometry projects
chemistry
mass-spectrometry
chemical-formulas
isotopes
proteomics-data
spectra-files
proteogenomics
mass-spectrometry-data
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May 9, 2024 - C#
NeoFlow: a proteogenomics pipeline for neoantigen discovery
proteogenomics
nextflow-pipeline
neoantigen-prediction
novel-peptide-identifications
neoantigen-discovery
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Jul 25, 2023 - Nextflow
Quantitative mass spectrometry workflow.
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May 7, 2024 - Nextflow
Python tools for proteogenomics analysis toolkit
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Apr 26, 2024 - Python
Customized protein database construction
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Sep 3, 2020 - Java
PepQuery: a targeted peptide search engine
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May 1, 2024 - Java
PGA: a tool for ProteoGenomics Analysis
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Mar 8, 2022 - R
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
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Sep 11, 2023 - C#
PGATK: ProteoGenomics Analysis ToolKit
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Aug 19, 2021
This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.
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Sep 29, 2023 - JavaScript
Research into statistical distributions of genomes, proteomes and reactomes
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Feb 14, 2022 - Scheme
The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
workflow
pipeline
nextflow
proteomics
cosmic
proteogenomics
nf-core
protein-databases
gnomad
pypgatk
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May 9, 2024 - Nextflow
Multi-Omics Peptide Generator
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May 7, 2024 - Python
Proteogenomics database-generation tool for protein haplotypes and variants
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May 8, 2024 - Python
6-frame proteogenomic peptide-spectrum match identification engine
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Sep 4, 2022 - Java
ProteomeGenomics Database Creation - Nextflow Pipeline
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Jun 22, 2022 - Nextflow
High performance io library for proteogenomics
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Sep 30, 2023 - Java
Library for Proteomics research literatures, tools and databases.
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Jan 13, 2021 - HTML
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