Visualizing transcript structure and annotation using ggplot2

A minimal desktop app for easy and convenient gene annotation and lookup.

Annotate DNA sequences for Gene Ontology terms

An R framework for phylostratigraphy

Deep learning methods for feature selection in gene expression autism data.

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

Structural variant VCF annotation, duplicate removal and comparison

Fastest GTF/GFF-to-BED converter chilling around

Pipeline for the identification of (coding) gene structures in draft genomes.

A high-performance BED-to-GTF converter written in Rust

Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes

scripts associated with yam genome assembly

Integrative systems analysis identifying the associations between genes and biological process or modules.

BED-to-GFF3 converter that runs in parallel

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

Analysis workflow to generate fungal assemblies, generate gene structural and functional annotations

Co-occurrence of enzyme domains

The related code of the master thesis, "Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana"

The post-TOGA processing pipeline

Supplementary code for the paper: Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders