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Pull requests: nf-core/tools

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Pull requests list

Fix linting fail on nfcore_external_java_deps if nf_schema is used
#2976 opened May 10, 2024 by itrujnara Loading…
2 of 4 tasks
3
Add charliecloud.registry
#2937 opened Apr 26, 2024 by nschan Loading…
6
Docs lift shift
#2911 opened Apr 5, 2024 by ewels • Draft
Allow nf-core download -r to download commits
#2906 opened Apr 4, 2024 by fellen31 • Draft
4 tasks
3
Plugin to view .nextflow.log files using toolong
WIP Work in progress
#2895 opened Mar 22, 2024 by ewels • Draft
2 of 4 tasks
1
Add nf-test to pipeline template CI workflow
#2881 opened Mar 19, 2024 by adamrtalbot Loading…
2 of 4 tasks
4
Test data uses paths instead of config map
#2877 opened Mar 19, 2024 by adamrtalbot Loading…
2 of 4 tasks
1
2
added patch command for subworkflows
#2861 opened Mar 18, 2024 by ctuni Loading…
1
3
Add nf-core configs create sub command
#2852 opened Mar 18, 2024 by jfy133 • Draft
4 tasks
1
1
Using packaging.version instead of pkg_resources
#2825 opened Mar 1, 2024 by asp8200 Loading…
4 tasks
4
Modules: Have component_files_identical check for new optional files in modules
#2816 opened Feb 29, 2024 by asp8200 Loading…
4 tasks
19
Add config contacts
#2800 opened Feb 27, 2024 by edmundmiller Loading…
@edmundmiller
3
template: update comments in .editorconfig file
#2790 opened Feb 23, 2024 by maxulysse Loading…
4 tasks
1
POC: module yaml restructure
WIP Work in progress
#2789 opened Feb 23, 2024 by ewels • Draft
8 tasks
2
Template: fix more pipeline name placeholder errors
#2786 opened Feb 21, 2024 by maxulysse Loading…
4 tasks
6
test using xdist for faster tests [skip changelog]
#2685 opened Jan 25, 2024 by mashehu • Draft
Add new command nf-core rocrate to create a Research Object (RO) crate for a pipeline
#2680 opened Jan 23, 2024 by mashehu Loading… 3.0
22
Update devcontainer.json
WIP Work in progress
#2663 opened Jan 17, 2024 by maxulysse • Draft
4 tasks
2
Add a multi-cloud test profile
#2544 opened Nov 28, 2023 by abhi18av • Draft
2 of 4 tasks
@abhi18av
22
new way to generate api docs
#2525 opened Nov 23, 2023 by mashehu Loading…
Add nf-prov
#2455 opened Sep 29, 2023 by maxulysse Loading…
4 tasks
13
Use INITIALISE subworkflow instead of WorkflowMain.initialise()
#2430 opened Sep 21, 2023 by adamrtalbot Loading…
2 of 4 tasks
18
nf-core modules list works on pipeline repos as well as module repos
#2418 opened Sep 11, 2023 by adamrtalbot Loading…
2 of 4 tasks
3
Textual create
command line tools Anything to do with the cli interfaces
#2404 opened Aug 20, 2023 by ewels Loading… 3.0
16
Use more pytest fixtures in modules tests WIP Work in progress
#2226 opened Mar 29, 2023 by fabianegli Loading…
1 of 4 tasks
9
ProTip! What’s not been updated in a month: updated:<2024-04-12.