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Issues: nf-core/tools

New functionality: nf-core config create
#2731 opened Feb 6, 2024 by jfy133
Open 1
[Project] Make nf-core create more customisable
#2340 opened Jun 27, 2023 by ewels
Open 3
[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
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226 Open 749 Closed
226 Open 749 Closed
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Issues list

[create]: Make textual tests pass locally enhancement
#2975 opened May 10, 2024 by mirpedrol
Pipeline CI dependant of the template version enhancement high-priority linting
#2966 opened May 9, 2024 by mirpedrol 3.0
@mirpedrol
[create]: Add button to open the created repo enhancement
#2965 opened May 9, 2024 by mirpedrol
[create]: Show org + repo name that will be created enhancement
#2964 opened May 9, 2024 by mirpedrol
[create]: different pipeline name validation for nf-core and custom pipelines enhancement
#2963 opened May 9, 2024 by mirpedrol
Using the nfcore/tools docker image gets permission denied now bug Something isn't working
#2944 opened May 1, 2024 by thondeboer
ToDo: Refactor SyncedRepo class and its subclasses ModulesRepo and WorkflowRepo enhancement infrastructure modules Related to tools for working with DSL2 modules subworkflows
#2940 opened Apr 28, 2024 by MatthiasZepper
Update linting to support to changes introduced in nf-schema enhancement
#2932 opened Apr 24, 2024 by nvnieuwk 3.0
2
Subworkflow installation bug bug Something isn't working
#2928 opened Apr 22, 2024 by IreneRobles
Combining linting and linting-comment workflows enhancement
#2925 opened Apr 18, 2024 by sgopalan98
Renaming job name in linting comment workflow bug Something isn't working
#2924 opened Apr 18, 2024 by sgopalan98
1
Replace check_max with resourceLimits template nf-core pipeline/component template
#2923 opened Apr 18, 2024 by ewels
nf-core subworkflows test --profile flag doesn't like specifying docker or conda bug Something isn't working
#2921 opened Apr 18, 2024 by jfy133
nf-core download OperationalError: disk I/O error bug Something isn't working
#2918 opened Apr 12, 2024 by bcardus
1
Add a suggestion to re-trigger nf-test when patching a modules enhancement
#2910 opened Apr 5, 2024 by maxulysse
Print warning if an nf-core module no longer exists. enhancement
#2905 opened Apr 3, 2024 by mahesh-panchal
Positional args warning is misleading bug Something isn't working
#2901 opened Mar 27, 2024 by awgymer
Lint for assertAll in main.nf.test files linting
#2900 opened Mar 27, 2024 by nvnieuwk
Add option for custom child-template repo command line tools Anything to do with the cli interfaces
#2898 opened Mar 26, 2024 by ewels
1
Schema lint: Handle exceptions for TypeErrors bug Something isn't working
#2896 opened Mar 25, 2024 by ewels
Unhelpful error message in nf-core download when container registry is not defined or is wrong bug Something isn't working
#2892 opened Mar 21, 2024 by remiolsen
2
CI Tests are broken in 3.12 bug Something isn't working
#2890 opened Mar 20, 2024 by awgymer
@awgymer
Add the ability to skip version check for specified include elements. enhancement
#2889 opened Mar 20, 2024 by TCLamnidis
Compile ucsc-bedgraphtobigwigh for ARM
#2866 opened Mar 18, 2024 by pabloaledo
Fix involucro for bioconductor-biocgenerics
#2864 opened Mar 18, 2024 by pabloaledo
@pabloaledo
1
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