GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
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Updated
Oct 30, 2020 - Perl
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
Converts Reactome pathways to GPML format
Explore biomolecular pathways in Reactome from the command-line or a Python script
A compilation of pathway gene sets
Converting SBGN encoded pathways to the SIF file format
pathfinder http://reactome.org/ graph binding
Integration of pathway-related information from Reactome in BEL
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…
Converting SBGN-encoded pathways to the SIF file format
Python implementation of a bipartite directed multigraph extracted from the Reactome biological pathway database.
rbioapi: User-Friendly R Interface to Biologic Web Services' API
An example on how to use reactome Rest API
Google Summer Of Code 2020.
A set of GO-CAMs built automatically from Reactome pathways.
Research into statistical distributions of genomes, proteomes and reactomes
This fork is intended solely for generating a GSEA jar file that is compatible with Reactome.
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