A compilation of pathway gene sets
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Updated
Apr 2, 2016 - Jupyter Notebook
A compilation of pathway gene sets
pathfinder http://reactome.org/ graph binding
An example on how to use reactome Rest API
Service to generate images of top level pathway view (the fireworks).
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
This fork is intended solely for generating a GSEA jar file that is compatible with Reactome.
Converting SBGN encoded pathways to the SIF file format
Converting SBGN-encoded pathways to the SIF file format
Google Summer Of Code 2020.
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
Integration of pathway-related information from Reactome in BEL
Research into statistical distributions of genomes, proteomes and reactomes
Python implementation of a bipartite directed multigraph extracted from the Reactome biological pathway database.
Converts Reactome pathways to GPML format
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…
Explore biomolecular pathways in Reactome from the command-line or a Python script
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