FastOMA is a scalable software package to infer orthology relationship.
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Updated
May 14, 2024 - Python
FastOMA is a scalable software package to infer orthology relationship.
orthology_map is a pipeline designed to integrate suite of orthology assignment tools to contribute in a consensus based scoring algorithm
a python package for automated generation of phylogenetic trees from genbank files
Feature-aware Directed OrtholoG search
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
a broadly applicable tool for automated gene identification and retrieval
Tree-based orthology inference with functionality for reducing contamination
Workflow for identifying and classifying homologous gene/protein sequences
Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
A stand-alone tool for evaluating simple statistics of orthologs
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.
Collection of scripts for gene age sorting and multi-omics data mining and analysis
Research compendium for Viscardi et al, 2020.
The Docker integration for the r2g project.
A Bio2BEL package for converting Entrez and HomoloGene to BEL
A Bio2BEL package for the terminology from FlyBase (http://flybase.org/)
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