a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
a broadly applicable tool for automated gene identification and retrieval
Reproducible Quantitative Methods for EEB
a versatile toolkit for processing and analyzing diverse types of sequence data
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
PyPop: Python for Population Genomics
Evolutionary simulation where agents age, reproduce, and eat each other
Create, modify and analyse phylogenetic trees in R
A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.
Newick formatted (phylogenetic) trees
R package: BALCONY (Better ALignment CONsensus analYsis)
My GitHub Page
HARE: Genetic Feature Enrichment Analysis Pipeline
A simple python3 program to compare aligned DNA/protein sequences.
Scripts associated with understanding the genomic features of NLRs in Arabidopsis thaliana Col-0
Bio-ModelChecker: Using Bounded Constraint Satisfaction to Seamlessly Integrate Observed Behavior with Prior Knowledge of Biological Networks
A collection of work investigating the potentiation of associative learning in digital organisms
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