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@DessimozLab

Dessimoz Lab

Popular repositories

  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 129 18

  2. fold_tree fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    Jupyter Notebook 50 3

  3. OMArk OMArk Public

    Python 38 6

  4. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 26 10

  5. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 19 7

  6. omamer omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    Python 14 5

Repositories

Showing 10 of 38 repositories
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 19 MPL-2.0 7 1 1 Updated May 6, 2024
  • edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    Python 3 0 0 1 Updated May 3, 2024
  • read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 129 MIT 18 17 0 Updated Apr 29, 2024
  • fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    Jupyter Notebook 50 MIT 3 6 0 Updated Apr 29, 2024
  • OMArk Public
    Python 38 LGPL-3.0 6 6 1 Updated Apr 19, 2024
  • OmaDB Public
    Jupyter Notebook 1 GPL-3.0 3 0 0 Updated Apr 18, 2024
  • pyoma Public

    Python library to interact with OMA hdf5 files

    Python 0 MPL-2.0 0 0 3 Updated Apr 9, 2024
  • omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    Python 14 LGPL-3.0 5 1 1 Updated Apr 8, 2024
  • gethogs Public

    A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs

    Python 0 MIT 0 0 2 Updated Mar 20, 2024
  • pyham Public
    Python 9 MIT 5 8 1 Updated Mar 19, 2024
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