Genome wide orthology inference and dNdS estimation
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Updated
Oct 10, 2023 - R
Genome wide orthology inference and dNdS estimation
Taxon-aware analysis of clustered protein sequences
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
A high performance tool to identify orthologs and paralogs across genomes.
a broadly applicable tool for automated gene identification and retrieval
Protein orthologous group assignment with deep learning
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Use Thor's Axe to cut exons into their evolutionary building blocks ⚡
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.
Feature-aware Directed OrtholoG search
Trace intervals between genomes using a synteny map
A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.
Tree-based orthology inference with functionality for reducing contamination
A snakemake workflow for the OrthoEvol python package.
Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach
A stand-alone tool for evaluating simple statistics of orthologs
EDA of virus orthologous groups (VOGs) from VOGDB and eggNOG
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