Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

Workflow for identifying and classifying homologous gene/protein sequences

Estimating gene family turnover rates by likelihood-based methods

Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).

Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.

Postgrad genomics projet

Extracting human gene families from HGNC

An R package to identify plant transcription factors from protein sequence data and classify them in families