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30 Open 89 Closed
30 Open 89 Closed
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Issues list

feat: function to report if flux vector is ΔG-compatible enhancement new field/feature
#353 opened Sep 28, 2023 by edkerk
Proposed changes to the anaerobic model
#352 opened Sep 24, 2023 by davidhcsic
2
duplicate metabolites identified
#338 opened Jun 6, 2023 by feiranl
4 tasks done
1
reaction references
#334 opened Apr 11, 2023 by mihai-sysbio
1 task done
Update according to genome update in 2021
#328 opened Nov 9, 2022 by feiranl
4 tasks
References for anaerobic benchmarking
#325 opened Sep 14, 2022 by mperisin-lallemand
2 of 4 tasks
10
feat: single ec-code annotation per reaction
#319 opened Jun 5, 2022 by edkerk
3 of 4 tasks
@edkerk
5
feat: KEGG pathway annotation
#317 opened Jun 5, 2022 by edkerk
3 of 4 tasks
Feat: A python function for anaerobic condition setup
#310 opened May 12, 2022 by feiranl
@hongzhonglu @cheng-yu-zhang
1
Feat-stoichiometry coefficients for subunits in the enzyme complex
#297 opened Jan 31, 2022 by feiranl
10
Fix-amino acid pathways localization bug something is wrong in the model wip work in progress
#294 opened Jan 31, 2022 by feiranl
4 tasks
@LarsBlank
1
reference for irreversible malate dehydrogenase during anaerobic simulation
#291 opened Dec 27, 2021 by mperisin-lallemand
4 tasks done
7
feat: have SLIMEr as option
#289 opened Dec 11, 2021 by edkerk
4 tasks
feat: curate grRules with GPRuler output
#288 opened Dec 11, 2021 by edkerk
@hongzhonglu @cheng-yu-zhang
doc: tutorial for yeast-GEM
#286 opened Dec 10, 2021 by edkerk
4 tasks
bug: unnecessary invalid BiGG identifiers suggested bug something is wrong in the model help wanted feel free to help us solving this issue!
#282 opened Dec 6, 2021 by edkerk
1 of 4 tasks
1
fix-update MNX IDs according to MNX database latest release 4.0 bug something is wrong in the model
#245 opened Aug 12, 2020 by feiranl
4 tasks done
4
feat:Missing annotations for Rhea and ModelSEED database help wanted feel free to help us solving this issue!
#231 opened Jun 19, 2020 by feiranl
4 tasks done
3
fix: remove generic reactions question ideas/feedback from other people would be appreciated
#219 opened May 5, 2020 by BenjaSanchez
3 tasks done
5
feat: allow contributions from python users format fix things associated to format of any of the model/data/script files standby work somewhere else is needed before advancing
#218 opened Apr 24, 2020 by BenjaSanchez
4 of 12 tasks
1
fix: avoid duplicity in gene name storage format fix things associated to format of any of the model/data/script files standby work somewhere else is needed before advancing
#217 opened Apr 23, 2020 by BenjaSanchez
2 tasks done
feat: yeast-GEM maps in caffeine platform enhancement new field/feature
#212 opened Mar 31, 2020 by BenjaSanchez
3 of 5 tasks
7
fix: mass- and charge balance reactions bug something is wrong in the model help wanted feel free to help us solving this issue!
#194 opened Jul 22, 2019 by edkerk
3 of 4 tasks
@hongzhonglu @eiden309
2
fix: biomass tests from memote memote anything related to the memote report standby work somewhere else is needed before advancing
#138 opened Jul 13, 2018 by BenjaSanchez
5 of 8 tasks
1
fix: stoichiometric consistency due to SLIME rxns help wanted feel free to help us solving this issue! memote anything related to the memote report question ideas/feedback from other people would be appreciated
#135 opened Jul 13, 2018 by BenjaSanchez
4 tasks done
ProTip! Exclude everything labeled bug with -label:bug.