Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

fix: stoichiometric consistency due to SLIME rxns #135

Open
4 tasks done
BenjaSanchez opened this issue Jul 13, 2018 · 0 comments
Open
4 tasks done

fix: stoichiometric consistency due to SLIME rxns #135

BenjaSanchez opened this issue Jul 13, 2018 · 0 comments
Labels
help wanted feel free to help us solving this issue! memote anything related to the memote report question ideas/feedback from other people would be appreciated

Comments

@BenjaSanchez
Copy link
Collaborator

Description of the issue:

In the consistency tests from the memote report, the "Stoichiometric Consistency" dropped significantly after adding SLIME reactions, as these reactions are by definition mass unbalanced. We should find a way of fixing this, by e.g. modifying the chemical formulas of the backbone and/or chain pseudo-metabolites.

I hereby confirm that I have:

  • Tested my code with all requirements for running the model
  • Done this analysis in the master branch of the repository
  • Checked that a similar issue does not exist already
  • If needed, asked first in the Gitter chat room about the issue
@BenjaSanchez BenjaSanchez added the question ideas/feedback from other people would be appreciated label Jul 13, 2018
@BenjaSanchez BenjaSanchez added this to To do in compliance via automation Jul 13, 2018
@BenjaSanchez BenjaSanchez added the memote anything related to the memote report label Jul 13, 2018
@BenjaSanchez BenjaSanchez added the help wanted feel free to help us solving this issue! label Nov 1, 2018
@edkerk edkerk added this to To do in yeast9 Dec 10, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
help wanted feel free to help us solving this issue! memote anything related to the memote report question ideas/feedback from other people would be appreciated
Projects
compliance
  
To do
yeast9
To do
Development

No branches or pull requests

1 participant