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duplicate metabolites identified #338

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feiranl opened this issue Jun 6, 2023 · 1 comment
Open
4 tasks done

duplicate metabolites identified #338

feiranl opened this issue Jun 6, 2023 · 1 comment

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@feiranl
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feiranl commented Jun 6, 2023

Description of the issue:

Reported by Han, Yichao yichao.han@pnnl.gov,
Thanks for identifying this!
There seems two metabolites suspected as duplicates: s_3948 and s_0557

I hereby confirm that I have:

  • Tested my code with all requirements for running the model
  • Done this analysis in the develop branch of the repository
  • Checked that a similar issue does not exist already
  • If needed, asked first in the Gitter chat room about the issue
@feiranl
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feiranl commented Jun 6, 2023

Basically s_0557(D-fructose 6-phosphate) contains s_3948(beta-D-Fructose 6-phosphate) and another alpha isomer. So technically, they are not 100% same. In the future, I think we will add all isomers in the model, so for now, it is ok to keep both now as far as I know. But it is good that to document that we have noticed this issue.

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