Official git repository for Biopython (originally converted from CVS)
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Updated
May 13, 2024 - Python
Official git repository for Biopython (originally converted from CVS)
A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.
Versatile open-source tool for microbiome analysis
A python package for working with inputs to and outputs from the toil-rnaseq pipeline
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
Sequence-to-graph mapper and graph generator
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Comparative Genomics Toolkit 3
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
subset and spaced seed design tool
A collection of publications on comparison of high-throughput sequencing technologies.
A Similarity-Guided Alignment Algorithm
Bioinformatic tool to predict structural protein-protein interfaces
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
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