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Issues list

Refactor of sequence collections and alignments
#1861 opened May 10, 2024 by GavinHuttley
3 tasks
Create new branch with sequence collections backend prototypes design API Design decisions enhancement New feature or request
#1860 opened May 10, 2024 by GavinHuttley 2024 Q2 release
@fredjaya
1
doctest-modules doesn't recognise docstring examples in decorated functions
#1844 opened May 2, 2024 by fredjaya
DEV: plugin metadata classifiers
#1812 opened Apr 13, 2024 by GavinHuttley
@khiron
1
Enh: Add bibliography to define_app
#1792 opened Mar 27, 2024 by khiron 2024 Q2 release
@khiron
3
ENH: use gap characters in <seqs>.get_identical_seqs() enhancement New feature or request
#1790 opened Mar 25, 2024 by GavinHuttley 2024 Q2 release
Enh: allow apps to be referenced by scope to avoid namespace collisions
#1789 opened Mar 21, 2024 by khiron
@khiron
1
ENH: write a db wrapper class for handling annotations etc...
#1749 opened Mar 12, 2024 by GavinHuttley 2024 Q2 release
@rmcar17
5
ENH: Prep for plugin infrastructure
#1748 opened Mar 12, 2024 by GavinHuttley
@khiron
3
Explore using DuckDb as the backend for AnnotationDb classes proposal task
#1747 opened Mar 6, 2024 by GavinHuttley
@rmcar17
2
mark identity() function for removal good first issue Good for newcomers help wanted Extra attention is needed
#1740 opened Feb 24, 2024 by GavinHuttley
3
mark tprob() function for removal good first issue Good for newcomers help wanted Extra attention is needed
#1739 opened Feb 24, 2024 by GavinHuttley
1
1
mark poisson_exact() function for removal good first issue Good for newcomers help wanted Extra attention is needed
#1734 opened Feb 24, 2024 by GavinHuttley
1
mark poisson_low() function for removal good first issue Good for newcomers help wanted Extra attention is needed
#1733 opened Feb 24, 2024 by GavinHuttley
1
mark binomial_exact() function for removal good first issue Good for newcomers help wanted Extra attention is needed
#1731 opened Feb 24, 2024 by GavinHuttley
1
1
Generalise tree infrastructure to handle multifurcating rooted trees design API Design decisions enhancement New feature or request
#1645 opened Nov 28, 2023 by rmcar17 2024 Q2 release
@rmcar17
2
cookbook for apps documentation Improvements or additions to documentation
#1636 opened Nov 21, 2023 by KatherineCaley
4 of 14 tasks
2024 Q2 release
@fredjaya @KatherineCaley @YapengLang
14
Add accepted format type to load_seq function documentation Improvements or additions to documentation good first issue Good for newcomers
#1634 opened Nov 21, 2023 by cthwe
2
Avoid hidden file in read only data stores for .zip bug Something isn't working good first issue Good for newcomers help wanted Extra attention is needed
#1628 opened Nov 17, 2023 by YapengLang
7
Document app to keep only the translatable sequences in a collection documentation Improvements or additions to documentation
#1627 opened Nov 16, 2023 by KatherineCaley
@KatherineCaley
1
pytest config preventing deprecation warnings being converted to errors contributor-experience Making life better for contributors help wanted Extra attention is needed
#1621 opened Nov 14, 2023 by GavinHuttley
2
pytest flag to convert DeprecationWarning into error not working
#1620 opened Nov 14, 2023 by GavinHuttley
1
DOC tutorial on feature handling
#1513 opened Jul 7, 2023 by GavinHuttley 2024 Q2 release
@KatherineCaley
1
linter workflow action causes problems in forked repositories
#1427 opened May 10, 2023 by khiron
1
@khiron
1
Implement SupportsCopy protocol for db_annotations
#1408 opened May 3, 2023 by khiron
ProTip! What’s not been updated in a month: updated:<2024-04-12.