Protein Graph Library

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

A Python API for the RCSB Protein Data Bank (PDB)

Deep functional residue identification

Ribbon diagrams of proteins in #golang.

Versatile computational pipeline for processing protein structure data for deep learning applications.

A collection of useful tutorials for Protein Science

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

Structural Bioinformatics Training Workshop & Hackathon 2018

The specification of the MMTF format for biological structures

Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny

Methods for mapping genomic data onto 3D protein structure.

Open Source, Mostly just clicking mouse to finish a simulation with Ambertools and OpenMM. It was designed to use locally but another notebook to finish the simulaiton on Colab was attached as well.

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

PDB parser in Haskell

A script that computationally designs a vaccine

Methods for mapping proteomics data on 3D protein structure.

Protein Data Bank (pdb) file parser

Clickable PDB statistics: synchrotrons and MX software