A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

A Go package for engineering organisms.

Versatile open-source tool for microbiome analysis

Renderers and renderer extensions for JupyterLab

SeqAn's official repository.

Efficient pythonic random access to fasta subsequences

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

A Java API for high-throughput sequencing data (HTS) formats.

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Syntax highlighting for computational biology

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

A collection of scripts and notes related to genomics and bioinformatics

Randomly subsample sequencing reads

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

A robust and fast clustering method for amplicon-based studies

🚀 seqfu - Sequece Fastx Utilities

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

Software for prediction of plasmid sequences in metagenomic assemblies