Open source bioinformatics and computational biology toolbox written in F#.

Numerical Encoding for Human Genetic Variants

Nucleic and amino acid primitive types

MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

Analysis of Sars Cov-2 Gene Mutations using Python Numpy and Matplotlib

deep learning experiments on biological sequences with PyTorch

Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.

A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.

Produces PDB files from given sequences.

FLiCK - Format LeveragIng Compression frameworK

Protein to RNA reverse translation

A website made for a year-long school project on how store data in DNA, using a nucleotides as our code. The website was made using the Flask framework to incoporate some python programs

Extracts all of the possible genes from a string of DNA

Inferring likelihood and mutation rate of an evolutionary tree through the Jukes-Cantor model and Felsenstein’s algorithm

shRNA 2.0

📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.

A little independent Python algorithm capable of finding Open Reading Frames in any genomic sequence.

A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.

A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.