vcfdist: Accurately benchmarking phased variant calls

Bioinformatics on GCP, AWS or Azure

Tool to estimate deltas for sequence sets and answer questions about relative contribution

Comprehensive design of CRISPR gRNAs for nucleases and base editors

A web application for interactive visualization and exploratory data analysis of variant call matrices

This repository serves as a valuable resource for individuals engaged in data exploration, statistical analysis, and research within the domains of plant breeding, genetics, statistics, and genomics. The purpose of this repository is to share a collection of R codes that can be utilized by others for their own data analysis projects

This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!

R package for annotating and parsing transposable elements-associated data

Analysis of SNP variants, derived from chip array genotyping and HTS sequencing

Final Exam for Coursera's Python for Genomic Data Science course

Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees

This repository contains the file codes used to complete the final project for the course Post Genomic Analysis.

NLR-Assembler is a command line tool for improving RenSeq Assemblies using linked-read sequencing by 10x Genomics.

Kissinger Research Group Shared Code

Genomics Carpentries Workshop at Rutgers University, April 25-26, 2024

Reverse Complement PCR (RC-PCR_ Classification pipeline.

Filter DE genes based on log2Folchange, FDR value or both

Genetic Algorithm implementation to study haplotypes of genomic features

Data for Smith et al. 2021 in Ecology and Evolution