List of software/websites/databases/other stuff for genome engineering
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Updated
May 14, 2024
List of software/websites/databases/other stuff for genome engineering
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
Synthego ICE - Inference of CRISPR Editing software
FlashFry: The rapid CRISPR target site characterization tool
Predicting Cell Health with Morphological Profiles
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
Cutting-edge Full-stack AI Platform delivered as a SaaS (Software as a Service). Built on a robust technology stack, integrated with powerful APIs such as OpenAI and Replicate, offers a seamless experience for code generation, conversation simulation, image creation, music composition, and video generation.
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
A better, faster way to count guides in CRISPR screens.
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
A software tool for personalized and allele-specific CRISPR editing.
GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
Comprehensive design of CRISPR gRNAs for nucleases and base editors
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
A gRNA database generation tool.
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