Amplicon sequencing analysis workflow using DADA2 and QIIME2

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

Collection of commonly used RDP Tools for easy building

Compare different differential abundance and expression methods

SINA - Reference based multiple sequence alignment

Various functions for analysis of microbial community data

The is mostly a wrapper tool using phyloseq and microbiome R packages.

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

Seplos Controller mit Webseite Der Esp8266 ist über ein Rs485 Modul mit dem Seplos BMS verbunden und kann diesem seine Daten entlocken. Shutdown Button: Das BMS wird ausgeschaltet , selbe Art als ob man länger auf dem BMS tastschalter bleibt. Kurzum die Firmware die es hier zum Download gibt, liest das Bms aus und es lässt sich per Button Klick …

A Nextflow full-length 16S profiling pipeline for ONT reads

💯 Snakemake-based amplicon processing protocol for 16S and ITS sequences.

Dadaist2 🟨 Highway to R

Tools for phylogenetic data analysis including visualization and cluster-computing support.

A Collection of Bioinformatics Projects

accessory functions for processing microbial community data

Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project

Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

A comprehensive, compact, and automatically curated 16S database